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aa9 lpmo sequences  (ATCC)


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    ATCC aa9 lpmo sequences
    Genome analysis of Ascomycota and Basidiomycota. The protein sequence annotations of 336 Ascomycota and 208 Basidiomycota genomes were used for genome analysis. In total, a 277 Ascomycota and b 178 Basidiomycota comprise <t>AA9</t> LPMOs encoding genes ( blue column ). Next to this occurrence of AA9 LPMOs encoding genes in Ascomycota and Basidiomycota, the co-occurrence of both Ab PPO-like and Mt PPO7-like, or either Ab PPO-like or Mt PPO7-like enzymes is indicated on the right of each column . The number of Ascomycota and Basidiomycota without co-occurrence of AA9 LPMOs encoding genes was 59 and 30, respectively ( red column ). In total, 50 Ascomycota and 17 Basidiomycota species were determined that do not carry any genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. c Total number of AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes annotated in 336 Ascomycota and 208 Basidiomycota genomes. d Distribution of annotated AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes within 336 Ascomycota and 208 Basidiomycota genomes. See “ ” for details
    Aa9 Lpmo Sequences, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 19 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/aa9+lpmo+sequences/Neurospora+crassa+Shear+et+Dodge/pmc05424327-299-72-86
    Average 94 stars, based on 19 article reviews
    aa9 lpmo sequences - by Bioz Stars, 2026-10
    94/100 stars

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    1) Product Images from "Boosting LPMO-driven lignocellulose degradation by polyphenol oxidase-activated lignin building blocks"

    Article Title: Boosting LPMO-driven lignocellulose degradation by polyphenol oxidase-activated lignin building blocks

    Journal: Biotechnology for Biofuels

    doi: 10.1186/s13068-017-0810-4

    Genome analysis of Ascomycota and Basidiomycota. The protein sequence annotations of 336 Ascomycota and 208 Basidiomycota genomes were used for genome analysis. In total, a 277 Ascomycota and b 178 Basidiomycota comprise AA9 LPMOs encoding genes ( blue column ). Next to this occurrence of AA9 LPMOs encoding genes in Ascomycota and Basidiomycota, the co-occurrence of both Ab PPO-like and Mt PPO7-like, or either Ab PPO-like or Mt PPO7-like enzymes is indicated on the right of each column . The number of Ascomycota and Basidiomycota without co-occurrence of AA9 LPMOs encoding genes was 59 and 30, respectively ( red column ). In total, 50 Ascomycota and 17 Basidiomycota species were determined that do not carry any genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. c Total number of AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes annotated in 336 Ascomycota and 208 Basidiomycota genomes. d Distribution of annotated AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes within 336 Ascomycota and 208 Basidiomycota genomes. See “ ” for details
    Figure Legend Snippet: Genome analysis of Ascomycota and Basidiomycota. The protein sequence annotations of 336 Ascomycota and 208 Basidiomycota genomes were used for genome analysis. In total, a 277 Ascomycota and b 178 Basidiomycota comprise AA9 LPMOs encoding genes ( blue column ). Next to this occurrence of AA9 LPMOs encoding genes in Ascomycota and Basidiomycota, the co-occurrence of both Ab PPO-like and Mt PPO7-like, or either Ab PPO-like or Mt PPO7-like enzymes is indicated on the right of each column . The number of Ascomycota and Basidiomycota without co-occurrence of AA9 LPMOs encoding genes was 59 and 30, respectively ( red column ). In total, 50 Ascomycota and 17 Basidiomycota species were determined that do not carry any genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. c Total number of AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes annotated in 336 Ascomycota and 208 Basidiomycota genomes. d Distribution of annotated AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes within 336 Ascomycota and 208 Basidiomycota genomes. See “ ” for details

    Techniques Used: Sequencing

    Statistical genome analysis of Ascomycota and Basidiomycota. a Principal component analysis (PCA) of genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 336 Ascomycota and 208 Basidiomycota genomes. The numbers which describe the presence of genes encoding AA9 LPMOs, Mt PPO7s, and Ab PPOs in each fungal species were used as variables and are presented as principal components of Ascomycota ( red dots ) and Basidiomycota ( blue dots ). The first two components of the PCA explained 69.8 and 19.6% variation in the data, respectively. Vectors ( red arrows ) with a similar orientation illustrate a high correlation between the gene families ( b ). The axis legends indicate the overall contribution of the three gene families encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. b Correlation between the three gene families encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 336 Ascomycota ( upper triangle ) and 208 Basidiomycota ( lower triangle ). c Correlation between genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 27 Ascomycota ( upper triangle ) and 23 Basidiomycota ( lower triangle ), which have at least ten annotated genes encoding cellulose-degrading enzymes per fungus. Species of both fungal classes are listed in Additional file : Table S2 and Additional file : Table S3. Numerical values of the correlations of b and c are presented in Additional file : Figure S6. See “ ” for details
    Figure Legend Snippet: Statistical genome analysis of Ascomycota and Basidiomycota. a Principal component analysis (PCA) of genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 336 Ascomycota and 208 Basidiomycota genomes. The numbers which describe the presence of genes encoding AA9 LPMOs, Mt PPO7s, and Ab PPOs in each fungal species were used as variables and are presented as principal components of Ascomycota ( red dots ) and Basidiomycota ( blue dots ). The first two components of the PCA explained 69.8 and 19.6% variation in the data, respectively. Vectors ( red arrows ) with a similar orientation illustrate a high correlation between the gene families ( b ). The axis legends indicate the overall contribution of the three gene families encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. b Correlation between the three gene families encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 336 Ascomycota ( upper triangle ) and 208 Basidiomycota ( lower triangle ). c Correlation between genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 27 Ascomycota ( upper triangle ) and 23 Basidiomycota ( lower triangle ), which have at least ten annotated genes encoding cellulose-degrading enzymes per fungus. Species of both fungal classes are listed in Additional file : Table S2 and Additional file : Table S3. Numerical values of the correlations of b and c are presented in Additional file : Figure S6. See “ ” for details

    Techniques Used:

    Related Articles

    Sequencing:

    Article Title: Boosting LPMO-driven lignocellulose degradation by polyphenol oxidase-activated lignin building blocks
    Article Snippet: BLAST databases for those protein sequences were created using ‘makeblastdb’ program in BLAST + v2.2.30 [ ].. The protein BLAST was performed separately using ten Mt PPO7 sequences [PDB id: 4j3p and closely related Mt PPO7s: Q2UNF9, Aspergillus oryzae (strain ATCC 42149); G2QC95, Myceliophthora thermophila (ATCC 42464); Q2H7I7, Chaetomium globosum (ATCC 6205); G0SFX8, Chaetomium thermophilum (DSM 1495); L7IAQ4, Magnaporthe oryzae (strain Y34); L7JMT9, Magnaporthe oryzae (strain P131); G4N2I5, Magnaporthe oryzae (strain 70-15); A0A084GCK1, Scedosporium apiospermum ; A0A0C4DYF2, Magnaporthiopsis poae (ATCC 64411); J3P591, Gaeumannomyces graminis var. tritici (strain R3-111a-1)], ten AA9 LPMO sequences (PDB id: 4d7u and closely related LPMOs: Q7SHI8, Neurospora crassa (strain ATCC 24698); G2QCJ3, Myceliophthora thermophila (strain ATCC 42464); F7W1P4, Sordaria macrospora (strain ATCC MYA-333); G2RB73, Thielavia terrestris (strain ATCC 38088); Q2H8N9, Chaetomium globosum (strain ATCC 6205); G0S408, Chaetomium thermophilum (strain DSM 1495); F8MLY8, N eurospora tetrasperma (strain FGSC 2508); T0L448, Colletotrichum gloeosporioides (strain Cg-14); A0A0H4K9X4 and A0A1C9CXI0, Myceliophthora thermophila C1); and four Ab PPOs ( Ab PPO1, Ab PPO2, Ab PPO3, and Ab PPO4 [ , ]) as query sequences.. Resulting sequences below E-value cut-off of 0.001 with query coverage above 60% for AA9 LPMOs, 65% for Mt PPO7s, and 85% for Ab PPOs were considered for further analysis.



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    Genome analysis of Ascomycota and Basidiomycota. The protein sequence annotations of 336 Ascomycota and 208 Basidiomycota genomes were used for genome analysis. In total, a 277 Ascomycota and b 178 Basidiomycota comprise <t>AA9</t> LPMOs encoding genes ( blue column ). Next to this occurrence of AA9 LPMOs encoding genes in Ascomycota and Basidiomycota, the co-occurrence of both Ab PPO-like and Mt PPO7-like, or either Ab PPO-like or Mt PPO7-like enzymes is indicated on the right of each column . The number of Ascomycota and Basidiomycota without co-occurrence of AA9 LPMOs encoding genes was 59 and 30, respectively ( red column ). In total, 50 Ascomycota and 17 Basidiomycota species were determined that do not carry any genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. c Total number of AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes annotated in 336 Ascomycota and 208 Basidiomycota genomes. d Distribution of annotated AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes within 336 Ascomycota and 208 Basidiomycota genomes. See “ ” for details
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    Image Search Results


    Genome analysis of Ascomycota and Basidiomycota. The protein sequence annotations of 336 Ascomycota and 208 Basidiomycota genomes were used for genome analysis. In total, a 277 Ascomycota and b 178 Basidiomycota comprise AA9 LPMOs encoding genes ( blue column ). Next to this occurrence of AA9 LPMOs encoding genes in Ascomycota and Basidiomycota, the co-occurrence of both Ab PPO-like and Mt PPO7-like, or either Ab PPO-like or Mt PPO7-like enzymes is indicated on the right of each column . The number of Ascomycota and Basidiomycota without co-occurrence of AA9 LPMOs encoding genes was 59 and 30, respectively ( red column ). In total, 50 Ascomycota and 17 Basidiomycota species were determined that do not carry any genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. c Total number of AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes annotated in 336 Ascomycota and 208 Basidiomycota genomes. d Distribution of annotated AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes within 336 Ascomycota and 208 Basidiomycota genomes. See “ ” for details

    Journal: Biotechnology for Biofuels

    Article Title: Boosting LPMO-driven lignocellulose degradation by polyphenol oxidase-activated lignin building blocks

    doi: 10.1186/s13068-017-0810-4

    Figure Lengend Snippet: Genome analysis of Ascomycota and Basidiomycota. The protein sequence annotations of 336 Ascomycota and 208 Basidiomycota genomes were used for genome analysis. In total, a 277 Ascomycota and b 178 Basidiomycota comprise AA9 LPMOs encoding genes ( blue column ). Next to this occurrence of AA9 LPMOs encoding genes in Ascomycota and Basidiomycota, the co-occurrence of both Ab PPO-like and Mt PPO7-like, or either Ab PPO-like or Mt PPO7-like enzymes is indicated on the right of each column . The number of Ascomycota and Basidiomycota without co-occurrence of AA9 LPMOs encoding genes was 59 and 30, respectively ( red column ). In total, 50 Ascomycota and 17 Basidiomycota species were determined that do not carry any genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. c Total number of AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes annotated in 336 Ascomycota and 208 Basidiomycota genomes. d Distribution of annotated AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes within 336 Ascomycota and 208 Basidiomycota genomes. See “ ” for details

    Article Snippet: The protein BLAST was performed separately using ten Mt PPO7 sequences [PDB id: 4j3p and closely related Mt PPO7s: Q2UNF9, Aspergillus oryzae (strain ATCC 42149); G2QC95, Myceliophthora thermophila (ATCC 42464); Q2H7I7, Chaetomium globosum (ATCC 6205); G0SFX8, Chaetomium thermophilum (DSM 1495); L7IAQ4, Magnaporthe oryzae (strain Y34); L7JMT9, Magnaporthe oryzae (strain P131); G4N2I5, Magnaporthe oryzae (strain 70-15); A0A084GCK1, Scedosporium apiospermum ; A0A0C4DYF2, Magnaporthiopsis poae (ATCC 64411); J3P591, Gaeumannomyces graminis var. tritici (strain R3-111a-1)], ten AA9 LPMO sequences (PDB id: 4d7u and closely related LPMOs: Q7SHI8, Neurospora crassa (strain ATCC 24698); G2QCJ3, Myceliophthora thermophila (strain ATCC 42464); F7W1P4, Sordaria macrospora (strain ATCC MYA-333); G2RB73, Thielavia terrestris (strain ATCC 38088); Q2H8N9, Chaetomium globosum (strain ATCC 6205); G0S408, Chaetomium thermophilum (strain DSM 1495); F8MLY8, N eurospora tetrasperma (strain FGSC 2508); T0L448, Colletotrichum gloeosporioides (strain Cg-14); A0A0H4K9X4 and A0A1C9CXI0, Myceliophthora thermophila C1); and four Ab PPOs ( Ab PPO1, Ab PPO2, Ab PPO3, and Ab PPO4 [ , ]) as query sequences.

    Techniques: Sequencing

    Statistical genome analysis of Ascomycota and Basidiomycota. a Principal component analysis (PCA) of genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 336 Ascomycota and 208 Basidiomycota genomes. The numbers which describe the presence of genes encoding AA9 LPMOs, Mt PPO7s, and Ab PPOs in each fungal species were used as variables and are presented as principal components of Ascomycota ( red dots ) and Basidiomycota ( blue dots ). The first two components of the PCA explained 69.8 and 19.6% variation in the data, respectively. Vectors ( red arrows ) with a similar orientation illustrate a high correlation between the gene families ( b ). The axis legends indicate the overall contribution of the three gene families encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. b Correlation between the three gene families encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 336 Ascomycota ( upper triangle ) and 208 Basidiomycota ( lower triangle ). c Correlation between genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 27 Ascomycota ( upper triangle ) and 23 Basidiomycota ( lower triangle ), which have at least ten annotated genes encoding cellulose-degrading enzymes per fungus. Species of both fungal classes are listed in Additional file : Table S2 and Additional file : Table S3. Numerical values of the correlations of b and c are presented in Additional file : Figure S6. See “ ” for details

    Journal: Biotechnology for Biofuels

    Article Title: Boosting LPMO-driven lignocellulose degradation by polyphenol oxidase-activated lignin building blocks

    doi: 10.1186/s13068-017-0810-4

    Figure Lengend Snippet: Statistical genome analysis of Ascomycota and Basidiomycota. a Principal component analysis (PCA) of genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 336 Ascomycota and 208 Basidiomycota genomes. The numbers which describe the presence of genes encoding AA9 LPMOs, Mt PPO7s, and Ab PPOs in each fungal species were used as variables and are presented as principal components of Ascomycota ( red dots ) and Basidiomycota ( blue dots ). The first two components of the PCA explained 69.8 and 19.6% variation in the data, respectively. Vectors ( red arrows ) with a similar orientation illustrate a high correlation between the gene families ( b ). The axis legends indicate the overall contribution of the three gene families encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. b Correlation between the three gene families encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 336 Ascomycota ( upper triangle ) and 208 Basidiomycota ( lower triangle ). c Correlation between genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 27 Ascomycota ( upper triangle ) and 23 Basidiomycota ( lower triangle ), which have at least ten annotated genes encoding cellulose-degrading enzymes per fungus. Species of both fungal classes are listed in Additional file : Table S2 and Additional file : Table S3. Numerical values of the correlations of b and c are presented in Additional file : Figure S6. See “ ” for details

    Article Snippet: The protein BLAST was performed separately using ten Mt PPO7 sequences [PDB id: 4j3p and closely related Mt PPO7s: Q2UNF9, Aspergillus oryzae (strain ATCC 42149); G2QC95, Myceliophthora thermophila (ATCC 42464); Q2H7I7, Chaetomium globosum (ATCC 6205); G0SFX8, Chaetomium thermophilum (DSM 1495); L7IAQ4, Magnaporthe oryzae (strain Y34); L7JMT9, Magnaporthe oryzae (strain P131); G4N2I5, Magnaporthe oryzae (strain 70-15); A0A084GCK1, Scedosporium apiospermum ; A0A0C4DYF2, Magnaporthiopsis poae (ATCC 64411); J3P591, Gaeumannomyces graminis var. tritici (strain R3-111a-1)], ten AA9 LPMO sequences (PDB id: 4d7u and closely related LPMOs: Q7SHI8, Neurospora crassa (strain ATCC 24698); G2QCJ3, Myceliophthora thermophila (strain ATCC 42464); F7W1P4, Sordaria macrospora (strain ATCC MYA-333); G2RB73, Thielavia terrestris (strain ATCC 38088); Q2H8N9, Chaetomium globosum (strain ATCC 6205); G0S408, Chaetomium thermophilum (strain DSM 1495); F8MLY8, N eurospora tetrasperma (strain FGSC 2508); T0L448, Colletotrichum gloeosporioides (strain Cg-14); A0A0H4K9X4 and A0A1C9CXI0, Myceliophthora thermophila C1); and four Ab PPOs ( Ab PPO1, Ab PPO2, Ab PPO3, and Ab PPO4 [ , ]) as query sequences.

    Techniques: